Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915212.1_cds_XP_016465084.1_58063
CDS Infomation

[gene=LOC107787968] [db_xref=GeneID:107787968] [protein=auxin response factor 5-like] [protein_id=XP_016465084.1] [location=join(38002..38104,38409..38521,39321..39419,39516..39572,39699..39851,39944..40028,40160..40250,40387..40551,40635..40757,40863..40938,41044..41179,41255..42504,42780..42970,43093..43231)] [gbkey=CDS]
Sequence

ATGGGTTCTGTTGAAGAAAAGCACAAGCCAGGAAGTTTGGTTAGTGGAGCACATACTCTA
CTTGAGGAAATGAAATTATTGAAAGAAATGCAGGATCATTCTGGAGGAAGGAAGCTAATA
AATTCAGAGCTGTGGCATGCTTGTGCTGGCCCACTTGTAACATTGCCTCAAGTTGGAAGC
CTTGTGTATTACTTCCCACAGGGGCACAGTGAACAGGTGGCAGTTTCCACAAACAGAACA
GCAACTTCCCAGATACCTAATTATCCAAATCTTGCTTCTCAGTTGTTGTGCCAAGTCCAC
AATGTTACCCTACATGCAGATAAAGAAACAGATGAGATCTATGCCCAAATGAGCCTCCAA
CCTGTGAATTCTGAGAAAGATGTCTTCCCCATTCCGGACTTTGGACTGAAGCCTAGTAAG
CATCCGACTGAGTTCTTCTGCAAAACTTTGACTGCCAGTGATACAAGCACACATGGTGGA
TTCTCAGTTCCTAGAAGAGCAGCAGAAAAGCTGTTCCCGCCCCTGGATTACTCAATGCAA
CCTCCAACACAAGAGCTTGTTGTACGAGACTTGCACAATAATACTTGGACATTCCGTCAC
ATATACCGCGGGCAGCCAAAGCGACATCTTCTCACAACCGGCTGGAGCATGTTTGTTGGA
GCAAAACGCCTTAGAGCAGGAGATTCTGTTCTATTTATCAGAGATGAGAAGTCACAGTTA
ATGTTGGGAGTGAGGCGTGCTAACCGTCAGCAAACCTCGTTGCCGTCTTCAGTTCTGTCT
GCTGATAGTATGCATATTGGAGTACTTGCAGCTGCTGCCCATGCTGCTGCTAATAGAAGC
ACATTCACAATTTTCTACAATCCAAGGGCATGCCCTTCAGAGTTTGTTATTCCCTTGGCC
AAATATAGAAAATCTGTTTATGGCACACAACTGTCAGTTGGTATGAGGTTTGGGATGATG
TTTGAAACTGAGGAATCGGGTAAACGCAGATACATGGGCACTATTGTTGGCATTAGTGAC
TTGGATCCACTAAGATGGCCTGGTTCCAAATGGCGGTGTCTTCAGGCAGAGTGGGACGAA
CCGGGATGTGGAGACAAGCAGAGTAGAGTTAGTCCATGGGAAGTTGAGACACCAGAAAGT
CTCTTCATATTTCCTTCTCTGACTGCAGGCCTCAAACGACCTTACCAGTCTTCCTTTTTG
GGAGCACAAACTGAGTGGGACAGTTTGATGCACCGCCCTTTCATGCGTGTTCCTGAAAAT
GTATATGGTGAACTTCAAATTTCCTCAATCTCAAACCTATGGTCAGAACAGTTAATGAAG
ATGCTGGCAAGACCTCCTGGTGTTACTGGTCTTCAATGCGGTGTCCCCACTGTACAAGAT
ATTAAGGTTGCACTACCTCAAGAATCTAGGAATCTAATACATGCAGCAGGCAACCAGAAA
CCTGAGCTAAGTACCGTAGAAGATACATCTGTACAAAGTGAAAGAAATCCTCAAGTCATC
CTCAATCAACCTTGTGTTGTGAACTCAATTTCTTCACCGCAAGCAACTCTGCAGCCAAAG
TCTCAACCTCCAGAAAAAGTAGGCTCCGACACTGTAGGAATAAGTTCTGAGCAGGCAAAA
GAAACTAGTGTTTCAGTGGATAGGTTAGATCAGTGTCAGTCCCTAGGGCAGTGTAATGAC
GAAAAAGTGACTATAAAGCCCGCAAGTCCACATATTCTCCCGACTGATGCAACAGCTTCC
CACCAGAACAGCTTATCTCAATTGCAATCCAGTCCATGGCGTCAAATTGAGGCTGCTAGT
GCCAATAATATCCTTCAATGCTCCAATAACAATGAGTGGAATCTGCCCTTCCAGTCTACT
GCTGGATTGCTCAGATCTCCTGTGTCGAACTCCACTTTGACGAAGCACGAGCATTCTTTT
ATGTTGCCTGATTCAGTTATTGGTCCTGGACTAGCTCCAATAGGCCAGGATTTGTGGGAT
CATCAGTTGAATGATGTGAAGTGCTTTTCCCAAACAAACCTTCAGGTTCCGCTGTTAACG
CAAGACATAACTAACATGCAGTTCTTACCTGATTCATATGGTTTTAAAGACTTATCAGAG
GAGAGCCATAACCAAAGCGACATATATAGTTGTCTTAATTTTGATAGTAACAGTGGGAGC
ACAGTGATTGATAATTCTGTTTCAAGCACAGTGTTAGATGAGTTCTGCACTTTAAAACAT
ACCGATTTCCAGAGTCCTTCAGATTTTCTATTAGGCAACTTCAGTTCTAGTCAAGACGTT
CAGTCTCAGATTACATCAGCTAGCCTGGCAGATTCTCAGAATTTCTCTGTACAAGATTTT
GCTGACAACTCAGGTGGCGCATCATCAAGCAATGTAAATTTTGATGAAAGTAATCTTTTG
CAGAATAGCTCATGGCAGCAAGTAGCTCCACGTGTGCGAACATATACAAAGATTCAAAAG
GCTGGATCTGTAGGAAGGTCAATTGATGTCTCCAGTTTTAAAACTTACGATGAACTGCGA
TCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTGCTGAATGACACGAGAGGCTCGGGG
TGGAAGCTGGTATACGTTGATTATGAGAATGATGTACTCCTTGTCGGGGATGATCCTTGG
GAGGAATTTGTTGGTTGTGTTCGATGTATCAGAATTTTATCGCCTACAGAAGTGCAGCAA
ATGGGAGAGGAAGGAATGCAGCTCTTGAACTCGGCCGGACTGCAGGGCATAAATGGCTCA
ACATCAGAATTTCCAAACTGA

Peptide Sequence

PEP ID

XP_016465084.1
PEP Infomation

PREDICTED: auxin response factor 5-like [Nicotiana tabacum]
Sequence

MGSVEEKHKPGSLVSGAHTLLEEMKLLKEMQDHSGGRKLINSELWHACAGPLVTLPQVGS
LVYYFPQGHSEQVAVSTNRTATSQIPNYPNLASQLLCQVHNVTLHADKETDEIYAQMSLQ
PVNSEKDVFPIPDFGLKPSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSMQ
PPTQELVVRDLHNNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFIRDEKSQL
MLGVRRANRQQTSLPSSVLSADSMHIGVLAAAAHAAANRSTFTIFYNPRACPSEFVIPLA
KYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRCLQAEWDE
PGCGDKQSRVSPWEVETPESLFIFPSLTAGLKRPYQSSFLGAQTEWDSLMHRPFMRVPEN
VYGELQISSISNLWSEQLMKMLARPPGVTGLQCGVPTVQDIKVALPQESRNLIHAAGNQK
PELSTVEDTSVQSERNPQVILNQPCVVNSISSPQATLQPKSQPPEKVGSDTVGISSEQAK
ETSVSVDRLDQCQSLGQCNDEKVTIKPASPHILPTDATASHQNSLSQLQSSPWRQIEAAS
ANNILQCSNNNEWNLPFQSTAGLLRSPVSNSTLTKHEHSFMLPDSVIGPGLAPIGQDLWD
HQLNDVKCFSQTNLQVPLLTQDITNMQFLPDSYGFKDLSEESHNQSDIYSCLNFDSNSGS
TVIDNSVSSTVLDEFCTLKHTDFQSPSDFLLGNFSSSQDVQSQITSASLADSQNFSVQDF
ADNSGGASSSNVNFDESNLLQNSSWQQVAPRVRTYTKIQKAGSVGRSIDVSSFKTYDELR
SEIERMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPTEVQQ
MGEEGMQLLNSAGLQGINGSTSEFPN

Transcript Sequence

Gene sequence data has not been registered.